cytoskeleton-analyser
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Examples
Application programming interface
cytoskeleton-analyser
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Index
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Index
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B
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C
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E
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F
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G
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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X
A
add_to_db() (cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.container.Base class method)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.container.Optional class method)
aik (cytoskeleton_analyser.fitting.base.Base attribute)
angular_spread (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocNucleus attribute)
assign() (cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.container.Base class method)
B
Base (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.container)
(class in cytoskeleton_analyser.fitting.base)
Base.Summary (class in cytoskeleton_analyser.fitting.base)
bounds (cytoskeleton_analyser.fitting.base.Base attribute)
C
cap_off (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cap_on (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_catastr_activation_extent (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_catastr_activation_intensity (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_catastr_inhibition_extent (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_catastr_inhibition_intensity (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_growth_slowdown_extent (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_growth_slowdown_intensity (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_orientation_extent (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_orientation_intensity (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_rescue_activation_extent (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_rescue_activation_intensity (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_rescue_inhibition_extent (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_rescue_inhibition_intensity (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cas_thickness (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cc (cytoskeleton_analyser.fitting.base.Base attribute)
Centrosome (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements.Mtoc property)
chi2 (cytoskeleton_analyser.fitting.base.Base attribute)
(cytoskeleton_analyser.fitting.base.Base.Summary property)
columns() (cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.container.Base class method)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.container.Optional class method)
Config (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config)
ConfigMtocCentrosome (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc)
ConfigMtocGolgi (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc)
ConfigMtocInSpace (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc)
ConfigMtocNucleus (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc)
ConfigNucleus (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus)
ConfigPlasma (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_plasma)
cov (cytoskeleton_analyser.fitting.base.Base attribute)
cut (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements
module
cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.container
module
cytoskeleton_analyser.database.sqlite_alchemy_orm.models
module
cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config
module
cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc
module
cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus
module
cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_plasma
module
cytoskeleton_analyser.fitting.base
module
cytosol_conc_coef (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cytosol_tubulin_total (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
cytosol_volume (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
E
equilibrium_ind (cytoskeleton_analyser.fitting.base.Base attribute)
existing_db_rows() (cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.container.Base class method)
F
fano (cytoskeleton_analyser.fitting.base.Base attribute)
filament_persist_length (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
filament_step (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
G
Golgi (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements.Mtoc property)
I
id (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocCentrosome attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocInSpace attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocNucleus attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus.ConfigNucleus attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_plasma.ConfigPlasma attribute)
InSpace (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements.Mtoc property)
is_used (cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements.MembraneNucleus attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements.MembranePlasma attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.container.Optional attribute)
L
logger (cytoskeleton_analyser.fitting.base.Base attribute)
M
main_config (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus.ConfigNucleus attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_plasma.ConfigPlasma attribute)
main_configs (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocCentrosome attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocInSpace attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocNucleus attribute)
mean (cytoskeleton_analyser.fitting.base.Base attribute)
(cytoskeleton_analyser.fitting.base.Base.Summary property)
MembraneNucleus (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements)
MembranePlasma (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements)
minus_end_cargo_free (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocCentrosome attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocInSpace attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocNucleus attribute)
model (cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements.Centrosome attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements.Golgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements.InSpace attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements.MembraneNucleus attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements.MembranePlasma attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements.Nucleus attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.container.Base attribute)
module
cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements
cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.container
cytoskeleton_analyser.database.sqlite_alchemy_orm.models
cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config
cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc
cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus
cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_plasma
cytoskeleton_analyser.fitting.base
Mtoc (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements)
mtoc_centrosome (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
mtoc_centrosome_id (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
mtoc_golgi (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
mtoc_golgi_id (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
mtoc_inspace (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
mtoc_inspace_id (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
mtoc_nucleus (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
mtoc_nucleus_id (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
N
name (cytoskeleton_analyser.fitting.base.Base attribute)
(cytoskeleton_analyser.fitting.base.Base.Summary property)
nuc_membr_interact_thresh (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
nuc_membr_orient_strength (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
Nucleus (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.cell_elements.Mtoc property)
nucleus (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
nucleus_id (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
num_filaments (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
O
Optional (class in cytoskeleton_analyser.database.sqlite_alchemy_orm.containers.container)
orientation_0 (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus.ConfigNucleus attribute)
orientation_1 (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus.ConfigNucleus attribute)
orientation_2 (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus.ConfigNucleus attribute)
origin_0 (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocCentrosome attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus.ConfigNucleus attribute)
origin_1 (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocCentrosome attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus.ConfigNucleus attribute)
origin_2 (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocCentrosome attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus.ConfigNucleus attribute)
P
p (cytoskeleton_analyser.fitting.base.Base attribute)
(cytoskeleton_analyser.fitting.base.Base.Summary property)
p0 (cytoskeleton_analyser.fitting.base.Base attribute)
par (cytoskeleton_analyser.fitting.base.Base attribute)
par_int (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocInSpace attribute)
par_real (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocInSpace attribute)
pl_membr_interact_thresh (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
pl_membr_orient_strength (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
plasma (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
plasma_id (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
polar_bias (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocNucleus attribute)
predict() (cytoskeleton_analyser.fitting.base.Base method)
prediction (cytoskeleton_analyser.fitting.base.Base attribute)
proximity_omit_own_nodes (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
proximity_step (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
proximity_threshold (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
R
release (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
report() (cytoskeleton_analyser.fitting.base.Base method)
residnorm (cytoskeleton_analyser.fitting.base.Base attribute)
run (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_plasma.ConfigPlasma attribute)
run_inds (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
S
saturation (cytoskeleton_analyser.fitting.base.Base attribute)
(cytoskeleton_analyser.fitting.base.Base.Summary property)
set_equilibration() (cytoskeleton_analyser.fitting.base.Base method)
set_logger() (in module cytoskeleton_analyser.fitting.base)
set_quality_indicators() (cytoskeleton_analyser.fitting.base.Base method)
size_0 (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocCentrosome attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus.ConfigNucleus attribute)
size_1 (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocCentrosome attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus.ConfigNucleus attribute)
size_2 (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocCentrosome attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus.ConfigNucleus attribute)
state_change_gs (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
state_change_ps (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
state_change_sg (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
summary() (cytoskeleton_analyser.fitting.base.Base method)
T
time_total (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
total_frac (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocCentrosome attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocInSpace attribute)
(cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocNucleus attribute)
type (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_plasma.ConfigPlasma attribute)
U
use_pbs (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocInSpace attribute)
V
var (cytoskeleton_analyser.fitting.base.Base attribute)
velocity_sh0 (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
velocity_sh1 (cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config attribute)
X
x (cytoskeleton_analyser.fitting.base.Base attribute)
x_units (cytoskeleton_analyser.fitting.base.Base attribute)
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