models package¶
config module¶
SqlAlchemy database model of full configuration parameter set.
- class cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config.Config(**kwargs)¶
Bases:
sqlalchemy.orm.decl_api.BaseSqlAlchemy database model of full configuration parameter set.
- cap_off¶
- cap_on¶
- cas_catastr_activation_extent¶
- cas_catastr_activation_intensity¶
- cas_catastr_inhibition_extent¶
- cas_catastr_inhibition_intensity¶
- cas_growth_slowdown_extent¶
- cas_growth_slowdown_intensity¶
- cas_orientation_extent¶
- cas_orientation_intensity¶
- cas_rescue_activation_extent¶
- cas_rescue_activation_intensity¶
- cas_rescue_inhibition_extent¶
- cas_rescue_inhibition_intensity¶
- cas_thickness¶
- cut¶
- cytosol_conc_coef¶
- cytosol_tubulin_total¶
- cytosol_volume¶
- filament_persist_length¶
- filament_step¶
- id¶
- mtoc_centrosome¶
- mtoc_centrosome_id¶
- mtoc_golgi¶
- mtoc_golgi_id¶
- mtoc_inspace¶
- mtoc_inspace_id¶
- mtoc_nucleus¶
- mtoc_nucleus_id¶
- nuc_membr_interact_thresh¶
- nuc_membr_orient_strength¶
- nucleus¶
- nucleus_id¶
- num_filaments¶
- pl_membr_interact_thresh¶
- pl_membr_orient_strength¶
- plasma¶
- plasma_id¶
- proximity_omit_own_nodes¶
- proximity_step¶
- proximity_threshold¶
- release¶
- run_inds¶
- state_change_gs¶
- state_change_ps¶
- state_change_sg¶
- time_total¶
- velocity_sh0¶
- velocity_sh1¶
config_mtoc module¶
SqlAlchemy database models of MTOC configuration parameters.
Configuration parameters for Microtubule Organizing Centers (MTOCs) are arranged in type-specific database tables.
- class cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocCentrosome(**kwargs)¶
Bases:
sqlalchemy.orm.decl_api.BaseDatabase model of MTOC settings for centrosomal microtubules.
- id¶
- main_configs¶
- minus_end_cargo_free¶
- origin_0¶
- origin_1¶
- origin_2¶
- size_0¶
- size_1¶
- size_2¶
- total_frac¶
- class cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_mtoc.ConfigMtocGolgi(**kwargs)¶
Bases:
sqlalchemy.orm.decl_api.BaseDatabase model of MTOC settings for Golgi-anchored microtubules.
- angular_spread¶
- id¶
- main_configs¶
- minus_end_cargo_free¶
- origin_0¶
- origin_1¶
- origin_2¶
- polar_bias¶
- size_0¶
- size_1¶
- size_2¶
- total_frac¶
config_nucleus module¶
SqlAlchemy database model of parameters for cell nucleus.
- class cytoskeleton_analyser.database.sqlite_alchemy_orm.models.config_nucleus.ConfigNucleus(**kwargs)¶
Bases:
sqlalchemy.orm.decl_api.BaseSqlAlchemy database model of parameters for cell nucleus.
- id¶
- main_config¶
- orientation_0¶
- orientation_1¶
- orientation_2¶
- origin_0¶
- origin_1¶
- origin_2¶
- size_0¶
- size_1¶
- size_2¶
config_plasma module¶
SqlAlchemy database model of parameters for cell plasma membrane.