cytoskeleton-analyser¶
Examines simulated cell microtubules
A postprocessor for extraction, analysis and human-friendly presentation of the raw binary results generated by Explicit-Microtubules.
Explicit-Microtubules is a C++ simulator of the whole-cell microtubule system. It reconstructs computationally the microtubule geometry and real-time dynamics in 3d space and time using stochastic algorithms. In the course of the simulation based on a multitude of bioogical information, it outputs detailed histories of microtubule dynamics along with three-dimensional snapshots of microtubules. However, designed to be focuced on versatile generation procedures, Explicit-Microtubules only includes basic data analysis.
Complementing the simulator, cytoskeleton-analyser is designed to extract, analyse and visualize various characteristics of the stochastically reconstructed microtubule system.